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Diagnostic: Heating and temperature control issues
Retention time and/or selectivity changes which show a diurnal pattern (e.g., decreasing gradually during the day and then increasing again at night), especially when accompanied by baseline drift, are often the result of laboratory temperature changes, especially for methods run at "ambient" temperature. Try temperature-controlling the column; it the results improve, then you had a temperature problem.

Even temperature-controlled systems can have their problems. If you are seeing diurnal variations in temperature-controlled systems, consider placing a temperature probe in contact with the column and monitoring the column temperature.

Instrument-to-instrument variations in retention or selectivity are often the result of differences in heat transfer in different column compartment designs. In general, "block" designs (in which the column is held in direct contact with a temperature-controlled metal block) will provide slightly higher "on-column" temperatures that will "air bath" designs which depend on air circulation, even if both systems are functioning properly and maintaining the same environmental temperature (metal conducts heat better than air!). As with the diurnal variations noted above, if you suspect temperature problems, you should monitor the actual column temperature. An even better approach is to mount a temperature probe in a tee fitting just downstream from the column and monitor the actual mobile phase temperature.

The higher the operating temperature, the greater the liklihood of problems cause by inadequate preheating (i.e., having the incoming mobile phase significantly cooler than the column inlet). Under these circumstances, both longitudinal (down the length of the column) and axial (across the column) temperature gradients may form, with the result that sample molecules move at different speeds in different parts of the column. Depending on the details of the gradient and migration velocities, the problem can show up as tailing, shoulders, flat-top peaks, or split peaks. Try doubling the length of preheater tubing. 

Ref: LC-GC 16 (12) 1080 (1998)
Ref: LC-GC 17(11) 1006 (1999)



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